CluSTr: a database of clusters of SWISS-PROT+TrEMBL proteins
AUTOR(ES)
Kriventseva, Evgenia V.
FONTE
Oxford University Press
RESUMO
The CluSTr (Clusters of SWISS-PROT and TrEMBL proteins) database offers an automatic classification of SWISS-PROT and TrEMBL proteins into groups of related proteins. The clustering is based on analysis of all pairwise comparisons between protein sequences. Analysis has been carried out for different levels of protein similarity, yielding a hierarchical organisation of clusters. The database provides links to InterPro, which integrates information on protein families, domains and functional sites from PROSITE, PRINTS, Pfam and ProDom. Links to the InterPro graphical interface allow users to see at a glance whether proteins from the cluster share particular functional sites. CluSTr also provides cross-references to HSSP and PDB. The database is available for querying and browsing at http://www.ebi.ac.uk/clustr.
ACESSO AO ARTIGO
http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=29804Documentos Relacionados
- Improvements to CluSTr: the database of SWISS-PROT+TrEMBL protein clusters
- Proteome Analysis Database: online application of InterPro and CluSTr for the functional classification of proteins in whole genomes
- The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000
- The SWISS-PROT protein sequence data bank and its supplement TrEMBL.
- The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003