Kinetic isotope effects in Ras-catalyzed GTP hydrolysis: Evidence for a loose transition state
AUTOR(ES)
Du, Xinlin
FONTE
National Academy of Sciences
RESUMO
A remote labeling method has been developed to determine 18O kinetic isotope effects (KIEs) in Ras-catalyzed GTP hydrolysis. Substrate mixtures consist of 13C-depleted GTP and [18O,13C]GTP that contains 18O at phosphoryl positions of mechanistic interest and 13C at all carbon positions of the guanosine moiety. Isotope ratios of the nonvolatile substrates and products are measured by using a chemical reaction interface/isotope ratio mass spectrometer. The isotope effects are 1.0012 (0.0026) in the γ nonbridge oxygens, 1.0194 (0.0025) in the leaving group oxygens (the β–γ oxygen and the two β nonbridge oxygens), and 1.0105 (0.0016) in the two β nonbridge oxygens. The KIE in the β–γ bridge oxygen was computed to be 1.0116 or 1.0088 by two different methods. The significant KIE in the leaving group reveals that chemistry is largely rate-limiting whereas the KIEs in the γ nonbridge oxygens and the leaving group indicate a loose transition state that approaches a metaphosphate. The KIE in the two β nonbridge oxygens is roughly equal to that in the β–γ bridge oxygen. This indicates that, in the transition state, Ras shifts one-half of the negative charge that arises from Pγ–Oβ–γ fission from the β–γ bridge oxygen to the two β nonbridge oxygens. The KIE effects, interpreted in light of structural and spectroscopic data, suggest that Ras promotes a loose transition state by stabilizing negative charge in the β–γ bridge and β nonbridge oxygens of GTP.
ACESSO AO ARTIGO
http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=428437Documentos Relacionados
- Ras-catalyzed hydrolysis of GTP: a new perspective from model studies.
- X-ray crystal structures of transforming p21 ras mutants suggest a transition-state stabilization mechanism for GTP hydrolysis.
- Evidence for the general base mechanism in carboxypeptidase A-catalyzed reactions: partitioning studies on nucleophiles and H2(18)O kinetic isotope effects.
- The structural basis for the transition from Ras-GTP to Ras-GDP
- Structural changes at microtubule ends accompanying GTP hydrolysis: Information from a slowly hydrolyzable analogue of GTP, guanylyl (α,β)methylenediphosphonate