The ProDom database of protein domain families.
AUTOR(ES)
Corpet, F
RESUMO
The ProDom database contains protein domain families generated from the SWISS-PROT database by automated sequence comparisons. It can be searched on the World Wide Web (http://protein.toulouse.inra. fr/prodom.html ) or by E-mail ([email protected]) to study domain arrangements within known families or new proteins. Strong emphasis has been put on the graphical user interface which allows for interactive analysis of protein homology relationships. Recent improvements to the server include: ProDom search by keyword; links to PROSITE and PDB entries; more sensitive ProDom similarity search with BLAST or WU-BLAST; alignments of query sequences with homologous ProDom domain families; and links to the SWISS-MODEL server (http: //www.expasy.ch/swissmod/SWISS-MODEL.html ) for homology based 3-D domain modelling where possible.
ACESSO AO ARTIGO
http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=147246Documentos Relacionados
- Recent improvements of the ProDom database of protein domain families.
- The ProDom database of protein domain families: more emphasis on 3D
- ProDom and ProDom-CG: tools for protein domain analysis and whole genome comparisons
- Predicting Gene Ontology Functions from ProDom and CDD Protein Domains
- The FSSP database of structurally aligned protein fold families.