Genomes In Silico
Mostrando 1-12 de 63 artigos, teses e dissertações.
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1. Draft genome of Thermomonospora sp. CIT 1 (Thermomonosporaceae) and in silico evidence of its functional role in filter cake biomass deconstruction
Abstract The filter cake from sugar cane processing is rich in organic matter and nutrients, which favors the proliferation of microorganisms with potential to deconstruct plant biomass. From the metagenomic data of this material, we assembled a draft genome that was phylogenetically related to Thermomonospora curvata DSM 43183, which shows the functional an
Genet. Mol. Biol.. Publicado em: 11/03/2019
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2. Exploring tRNA gene cluster in archaea
BACKGROUND Shared traits between prokaryotes and eukaryotes are helpful in the understanding of the tree of life evolution. In bacteria and eukaryotes, it has been shown a particular organisation of tRNA genes as clusters, but this trait has not been explored in the archaea domain. OBJECTIVE Explore the occurrence of tRNA gene clusters in archaea. METHO
Mem. Inst. Oswaldo Cruz. Publicado em: 07/01/2019
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3. Approaches for in silico finishing of microbial genome sequences
Abstract The introduction of next-generation sequencing (NGS) had a significant effect on the availability of genomic information, leading to an increase in the number of sequenced genomes from a large spectrum of organisms. Unfortunately, due to the limitations implied by the short-read sequencing platforms, most of these newly sequenced genomes remained as
Genet. Mol. Biol.. Publicado em: 2017-09
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4. REGULAÇÃO GÊNICA DA VIA AMPK PELO EXERCÍCIO FÍSICO: REVISÃO SISTEMÁTICA E ANÁLISE IN SILICO
RESUMO Introdução: Novos estudos de regulação gênica do exercício físico por meio de técnicas pós-genômicas em ensaios de resistência (endurance) e força caracterizam a transcriptômica do exercício físico. Entre os genes afetados, destacamos a via da proteína quinase ativada por AMP (AMPK), cuja ativação ocorre durante o exercício como re
Rev Bras Med Esporte. Publicado em: 2017-08
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5. Comparative genomic analysis of Brazilian Leptospira kirschneri serogroup Pomona serovar Mozdok
Leptospira kirschneri is one of the pathogenic species of the Leptospira genus. Human and animal infection from L. kirschneri gained further attention over the last few decades. Here we present the isolation and characterisation of Brazilian L. kirschneri serogroup Pomona serovar Mozdok strain M36/05 and the comparative genomic analysis with Brazilian human
Mem. Inst. Oswaldo Cruz. Publicado em: 11/07/2016
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6. Mining plant genome browsers as a means for efficient connection of physical, genetic and cytogenetic mapping: an example using soybean
Physical maps are important tools to uncover general chromosome structure as well as to compare different plant lineages and species, helping to elucidate genome structure, evolution and possibilities regarding synteny and colinearity. The increasing production of sequence data has opened an opportunity to link information from mapping studies to the underly
Genetics and Molecular Biology. Publicado em: 2012
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7. Mecanismos intraflagelares de transporte e trânsito de proteínas: uma abordagem pós-genômica e computacional de caracterização da virulência flagelar em Leishmania spp. / Intraflagelares mechanisms of transport and transit proteins: a post-genomics and computational characterization of virulence flagellar Leishmania spp.
Leishmania are flagellated protozoa that cause a main neglected diseasease, collectively known as leishmaniases, posing a constant challenge for the control and prevention of the disease due to the wide-world distribution and prevalence of these parasites. As an insinuating pathogen, Leishmania has a specialized organelle for motility, the flagellum, which i
IBICT - Instituto Brasileiro de Informação em Ciência e Tecnologia. Publicado em: 12/01/2011
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8. Comparative analysis of two component signal transduction systems of the Lactobacillus acidophilus group
The Lactobacillus acidophilus group is a phylogenetically distinct group of closely related lactobacilli. Members of this group are considered to have probiotic properties and occupy different environmental niches. Bacteria generally sense and respond to environmental changes through two component systems (TCSs) which consist of a histidine protein kinase (H
Brazilian Journal of Microbiology. Publicado em: 2011-03
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9. PredIP: an in silico approach for automated protein interaction prediction in genomic and transcriptomic sequence databanks.
The fast-growing amount of protein interaction databanks have made possible to analyze deeply several metabolic or signaling pathways in different organisms. The information available in such databanks can be used to predict new protein interactions in transcriptome or proteome sequences, most of times this task is done by sequence homology or by structure s
INTERNATIONAL CONFERENCE OF THE BRAZILIAN ASSOCIATION FOR BIOINFORMATICS AND COMPUTATIONAL BIOLOGY. Publicado em: 2011
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10. A high-throughput data mining of single nucleotide polymorphisms in Coffea species expresed sequence tags suggests differential homeologous gene expression in the allotetrapoloid Coffea arabica.
Polyploidization constitutes a common mode of evolution in flowering plants. This event provides the raw material for the divergence of function in homeologous genes, leading to phenotypic novelty that can contribute to the success of polyploids in nature or their selection for use in agriculture. Mounting evidence underlined the existence of homeologous exp
PLANT PHYSIOLOGY. Publicado em: 2011
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11. A high-throughput data mining of single nucleotide polymorphisms in Coffea species expresed sequence tags suggests differential homeologous gene expression in the allotetrapoloid Coffea arabica.
Polyploidization constitutes a common mode of evolution in flowering plants. This event provides the raw material for the divergence of function in homeologous genes, leading to phenotypic novelty that can contribute to the success of polyploids in nature or their selection for use in agriculture. Mounting evidence underlined the existence of homeologous exp
PLANT PHYSIOLOGY. Publicado em: 2011
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12. Identificação e análise de sequências codificantes com atributos conflitantes em genomas procariotos / Analysis and identification of prokaryotic coding sequences with confliting atributes eng
The advent of new sequencing technologies and the development of computational tools that facilitate the analysis of genomes, generated the exponential growth of genome databases. New approaches in-silico of the comparative genomics use such data in its comparisons. Nevertheless, recent work on the genome of Escherichia coli indicate that the current state o
IBICT - Instituto Brasileiro de Informação em Ciência e Tecnologia. Publicado em: 23/08/2010